由于临床实践所需的放射学报告和研究是在自由文本叙述中编写和存储的,因此很难提取相对信息进行进一步分析。在这种情况下,自然语言处理(NLP)技术可以促进自动信息提取和自由文本格式转换为结构化数据。近年来,基于深度学习(DL)的模型已适用于NLP实验,并具有令人鼓舞的结果。尽管基于人工神经网络(ANN)和卷积神经网络(CNN)的DL模型具有显着潜力,但这些模型仍面临临床实践中实施的一些局限性。变形金刚是另一种新的DL体系结构,已越来越多地用于改善流程。因此,在这项研究中,我们提出了一种基于变压器的细粒命名实体识别(NER)架构,以进行临床信息提取。我们以自由文本格式收集了88次腹部超声检查报告,并根据我们开发的信息架构进行了注释。文本到文本传输变压器模型(T5)和covive是T5模型的预训练域特异性适应性,用于微调来提取实体和关系,并将输入转换为结构化的格式。我们在这项研究中基于变压器的模型优于先前应用的方法,例如基于Rouge-1,Rouge-2,Rouge-L和BLEU分别为0.816、0.668、0.528和0.743的ANN和CNN模型,同时提供了一个分数可解释的结构化报告。
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Compliance in actuation has been exploited to generate highly dynamic maneuvers such as throwing that take advantage of the potential energy stored in joint springs. However, the energy storage and release could not be well-timed yet. On the contrary, for multi-link systems, the natural system dynamics might even work against the actual goal. With the introduction of variable stiffness actuators, this problem has been partially addressed. With a suitable optimal control strategy, the approximate decoupling of the motor from the link can be achieved to maximize the energy transfer into the distal link prior to launch. However, such continuous stiffness variation is complex and typically leads to oscillatory swing-up motions instead of clear launch sequences. To circumvent this issue, we investigate decoupling for speed maximization with a dedicated novel actuator concept denoted Bi-Stiffness Actuation. With this, it is possible to fully decouple the link from the joint mechanism by a switch-and-hold clutch and simultaneously keep the elastic energy stored. We show that with this novel paradigm, it is not only possible to reach the same optimal performance as with power-equivalent variable stiffness actuation, but even directly control the energy transfer timing. This is a major step forward compared to previous optimal control approaches, which rely on optimizing the full time-series control input.
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Tumor-stroma ratio (TSR) is a prognostic factor for many types of solid tumors. In this study, we propose a method for automated estimation of TSR from histopathological images of colorectal cancer. The method is based on convolutional neural networks which were trained to classify colorectal cancer tissue in hematoxylin-eosin stained samples into three classes: stroma, tumor and other. The models were trained using a data set that consists of 1343 whole slide images. Three different training setups were applied with a transfer learning approach using domain-specific data i.e. an external colorectal cancer histopathological data set. The three most accurate models were chosen as a classifier, TSR values were predicted and the results were compared to a visual TSR estimation made by a pathologist. The results suggest that classification accuracy does not improve when domain-specific data are used in the pre-training of the convolutional neural network models in the task at hand. Classification accuracy for stroma, tumor and other reached 96.1$\%$ on an independent test set. Among the three classes the best model gained the highest accuracy (99.3$\%$) for class tumor. When TSR was predicted with the best model, the correlation between the predicted values and values estimated by an experienced pathologist was 0.57. Further research is needed to study associations between computationally predicted TSR values and other clinicopathological factors of colorectal cancer and the overall survival of the patients.
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In addition to its public health crisis, COVID-19 pandemic has led to the shutdown and closure of workplaces with an estimated total cost of more than $16 trillion. Given the long hours an average person spends in buildings and indoor environments, this research article proposes data-driven control strategies to design optimal indoor airflow to minimize the exposure of occupants to viral pathogens in built environments. A general control framework is put forward for designing an optimal velocity field and proximal policy optimization, a reinforcement learning algorithm is employed to solve the control problem in a data-driven fashion. The same framework is used for optimal placement of disinfectants to neutralize the viral pathogens as an alternative to the airflow design when the latter is practically infeasible or hard to implement. We show, via simulation experiments, that the control agent learns the optimal policy in both scenarios within a reasonable time. The proposed data-driven control framework in this study will have significant societal and economic benefits by setting the foundation for an improved methodology in designing case-specific infection control guidelines that can be realized by affordable ventilation devices and disinfectants.
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In this paper a global reactive motion planning framework for robotic manipulators in complex dynamic environments is presented. In particular, the circular field predictions (CFP) planner from Becker et al. (2021) is extended to ensure obstacle avoidance of the whole structure of a robotic manipulator. Towards this end, a motion planning framework is developed that leverages global information about promising avoidance directions from arbitrary configuration space motion planners, resulting in improved global trajectories while reactively avoiding dynamic obstacles and decreasing the required computational power. The resulting motion planning framework is tested in multiple simulations with complex and dynamic obstacles and demonstrates great potential compared to existing motion planning approaches.
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Computer vision and machine learning are playing an increasingly important role in computer-assisted diagnosis; however, the application of deep learning to medical imaging has challenges in data availability and data imbalance, and it is especially important that models for medical imaging are built to be trustworthy. Therefore, we propose TRUDLMIA, a trustworthy deep learning framework for medical image analysis, which adopts a modular design, leverages self-supervised pre-training, and utilizes a novel surrogate loss function. Experimental evaluations indicate that models generated from the framework are both trustworthy and high-performing. It is anticipated that the framework will support researchers and clinicians in advancing the use of deep learning for dealing with public health crises including COVID-19.
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This paper presents the OPUS ecosystem with a focus on the development of open machine translation models and tools, and their integration into end-user applications, development platforms and professional workflows. We discuss our on-going mission of increasing language coverage and translation quality, and also describe on-going work on the development of modular translation models and speed-optimized compact solutions for real-time translation on regular desktops and small devices.
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Existing statistical methods can be used to estimate a policy, or a mapping from covariates to decisions, which can then instruct decision makers. There is great interest in using such data-driven policies in healthcare. In healthcare, however, it is often important to explain to the healthcare provider, and to the patient, how a new policy differs from the current standard of care. This end is facilitated if one can pinpoint the aspects (i.e., parameters) of the policy that change most when moving from the standard of care to the new, suggested policy. To this end, we adapt ideas from Trust Region Policy Optimization. In our work, however, unlike in Trust Region Policy Optimization, the difference between the suggested policy and standard of care is required to be sparse, aiding with interpretability. In particular, we trade off between maximizing expected reward and minimizing the $L_1$ norm divergence between the parameters of the two policies. This yields "relative sparsity," where, as a function of a tuning parameter, $\lambda$, we can approximately control the number of parameters in our suggested policy that differ from their counterparts in the standard of care. We develop our methodology for the observational data setting. We propose a problem-specific criterion for selecting $\lambda$, perform simulations, and illustrate our method with a real, observational healthcare dataset, deriving a policy that is easy to explain in the context of the current standard of care. Our work promotes the adoption of data-driven decision aids, which have great potential to improve health outcomes.
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Quantum machine learning techniques are commonly considered one of the most promising candidates for demonstrating practical quantum advantage. In particular, quantum kernel methods have been demonstrated to be able to learn certain classically intractable functions efficiently if the kernel is well-aligned with the target function. In the more general case, quantum kernels are known to suffer from exponential "flattening" of the spectrum as the number of qubits grows, preventing generalization and necessitating the control of the inductive bias by hyperparameters. We show that the general-purpose hyperparameter tuning techniques proposed to improve the generalization of quantum kernels lead to the kernel becoming well-approximated by a classical kernel, removing the possibility of quantum advantage. We provide extensive numerical evidence for this phenomenon utilizing multiple previously studied quantum feature maps and both synthetic and real data. Our results show that unless novel techniques are developed to control the inductive bias of quantum kernels, they are unlikely to provide a quantum advantage on classical data.
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Considering the spectral properties of images, we propose a new self-attention mechanism with highly reduced computational complexity, up to a linear rate. To better preserve edges while promoting similarity within objects, we propose individualized processes over different frequency bands. In particular, we study a case where the process is merely over low-frequency components. By ablation study, we show that low frequency self-attention can achieve very close or better performance relative to full frequency even without retraining the network. Accordingly, we design and embed novel plug-and-play modules to the head of a CNN network that we refer to as FsaNet. The frequency self-attention 1) takes low frequency coefficients as input, 2) can be mathematically equivalent to spatial domain self-attention with linear structures, 3) simplifies token mapping ($1\times1$ convolution) stage and token mixing stage simultaneously. We show that the frequency self-attention requires $87.29\% \sim 90.04\%$ less memory, $96.13\% \sim 98.07\%$ less FLOPs, and $97.56\% \sim 98.18\%$ in run time than the regular self-attention. Compared to other ResNet101-based self-attention networks, FsaNet achieves a new state-of-the-art result ($83.0\%$ mIoU) on Cityscape test dataset and competitive results on ADE20k and VOCaug.
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